------- SECIS element -- id:1 -- grade:B ----
 Chromosome = CM007938.1:subseq_62674219,183503_ Strand = - Positions = 36236 - 36177
 Found by:  Infernal (score=12.29) Covels (score=1.49)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -9.5

         ..(((((((.......((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ...(({({(---(...([[[((((((((..........-----------))))))))]]])----...))})}))...
 target  UUAACUGCC---UCCAUGAACACAACACACUCCUCUGG-----------GUGUUGUGGGAG----ACCAGUCUGUCCC
                         ****           ^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = CM007938.1:subseq_62674219,183503_ Strand = + Positions = 171903 - 171979
 Found by:  Infernal (score=10.75) Covels (score=4.61)
 Stem2 length = 10   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -12.3

         ..(((((((.......(((((((((((((((.....................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .....((((---....([[((((([(((((.......................)))))])))))]])----....)))).....
 target  UCAACCAGC---UUCAUGAGGAAUGCUUUUCCAACAGUCUUGAAGGAGAAGAAGGAAGAGUUCCGAA----AUAUGCUGAGCAC
                         ****            ^^                             ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = CM007938.1:subseq_62674219,183503_ Strand = + Positions = 69913 - 70006
 Found by:  Infernal (score=10.59) Covels (score=2.64)
 Stem2 length = 9   Apical loop length = 26   Insertion in stem2 = 0, 0
 Free Energy = -5.32

         ..(((((((.............(((((((((((((((........................)))))))))))))))..........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuugggg---------cgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..([(((((.............{[[{(({(((((((..........................)))))))}))}]]}......-...)))))])..
 target  UCCAGGUUCAUCUCUCUGUACAUGAUGGCUUUGUUAUGGAAGGUUUGGGUGGUUGUAGAAUUUAACAGAUUUUGAUGACUAG-CAGGAAUCGGCC
                               ****             ^^                               ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = CM007938.1:subseq_62674219,183503_ Strand = + Positions = 103873 - 103951
 Found by:  Infernal (score=10.05) Covels (score=8.79)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -5.05

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((({(.......([[(((((({((({(................)})))}))))))]]).....-...)})))))..
 target  UGACUUUUGUUCCAGUGGAAAACAACUUUGUAAAGACUUUCAUCAGGGGAAAUUUGUUUGAUGACUU-UUCCCAGAGUGC
                         ****           ^^^                        ****                  

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = CM007938.1:subseq_62674219,183503_ Strand = + Positions = 103408 - 103486
 Found by:  Infernal (score=10.05) Covels (score=8.79)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -5.05

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((({(.......([[(((((({((({(................)})))}))))))]]).....-...)})))))..
 target  UGACUUUUGUUCCAGUGGAAAACAACUUUGUAAAGACUUUCAUCAGGGGAAAUUUGUUUGAUGACUU-UUCCCAGAGUGC
                         ****           ^^^                        ****